A t/c unit on a turbo bike will be very interesting. I hope it'll allow control of ignition timing, ignition & fuel cut, and wastegate pressure in the least.
Is the t/c unit being used as a crutch/safety factor for poor boost control mapping in the AMS1000? No plans on using the AMS2000?
The project seems basic enough. Stage2 for fun and street friendly shouldn't be hard to accomplish. Keep the clutch and suspension setup friendly and the bike can be a well rounded package. Just swap street gas for race gas and flip the map from mild to wild.
What are the goals/predictions for the 1/4 et and stand mile? (low 8's & 230mph?)
I would really look into the ECU editor "stuff" it can do a whole lot of things. I'm sure you do have some restrictions because of sponsor and such which might not make it feasable.