Yes, it will run a little bit better, but not as much as with the PC3r and a sync job. I'd really recommend spending the $350 and getting the PC3r. If nothing else, it's pretty cool to tell your friends you can "program you motorcycle".
Syncronizing the throttle bodies is not that hard a job to do, but you'll need a factory service manual (or the instructions from it) and you'll need the special tool. If you get the manual info, it'll tell you what tool you'll need. You can do it yourself, if you have a good mechanical aptitude and can follow the manual instructions exactly.
If you do all of the above, you'll notice a smoother power delivery, but let me add this. You'll also get much better drivability by just making sure the idle is set to around 1200. Any lower and it has a tendancy to get jerky. Adjusting the idle is easy though. just make sure the engine is thoughroughly warmed up before proceeding to adjust it.
Don't expect the world for smoothness cruising through town. it's like a tiger in a cage, but as you get used to the throttle, it will get better. Also, for cruising in town, stay in the higher gears, you won't get as much usable power so you won't jerk the bike as much. You can always downshift when you need more power.
johncal