I gotta respectfully disagree. If ever there was a machine in need of the enhanced braking performance of radial calipers and master cylinders it is the stock Hayabusa. And While the radial calipers may not be a necessity, they are state of the art for shedding speed, because they are more mechanically efficient than the stock six piston calipers on the gen I. The Radial master cylinders are the current state of the art for the same reason. As Vman pointed out the stock brakes respond very well to the addition of a radial master cylinder. Look at every front line Sportbike made today to see this in action. While you may not need the extra braking power, you will be able to put more focus on the other tasks at hand in a heavy braking application if you aren't applying the kung fu grip to the brake lever to make it happen.
The 04-05 750 had radial brakes so those would be part of the equation in this case as well.
Good call on having GP redo the forks. That is my very intent this winter.
I already have the Braided Galfer lines and EBC HH pads and recently added CRG levers to adjust the span to my tastes and am still left wanting!