Sounds good to me. You'll get (sometimes quite) different readings on different dynos. It's best to use the same dyno over and over to calculate gains/losses from mods, tuning, etc,. You can jack the dyno around to get a bigger number but the bike will still be making the same power.
All the dyno runs I've seen were pulled in a close to top gear. The operator used 5th gear on my bike (providing I counted shifts right, 4th or 5th).
Several dyno experts on the board, I'm sure someone will chime in soon.