I've got a 99 that sat for at least as long as yours. The kid I bought it from put in a new fuel pump and got it running. Bear in mind that I am OCD and trust no one when it comes to high speed machines but this is what I have planned for the winter.
New tires, chain and sprockets -1 in the front. New brakes all around - rebuild kits for the masters and all calipers, full set of SS lines except for the rear. EBC HH pads. New fuel lines and filter, repack steering head bearings, also all the needle bearings in the swingarm. Inspect valve clearances, clean throttle bodies, send out injectors to be cleaned. Replace coolant, new battery.
Also fully clean everything, I am sure more stuff will turn up as I go. I want this to be a reliable ride. This bike has bee unloved but seems ok - it's got some scratches and dings but no cracks in the fairings or anything.
Enjoy your bike - I am already looking forward to ripping it up on mine!