The cylinder hone actually look a little rough (coarse) to me but that could be the photo.
Did you oil the rings when you put it together?
This is what I use and the rings seat pretty quick.
Usually though I warm it up after overhaul, check for leaks then off to the dyno.
We all have learned...
I take a piece of fuel line that slips over the oil pump shaft, put a piece of round stock in the other end of the hose and drive it with my cordless drill.
https://www.harborfreight.com/slide-hammer-and-bearing-puller-set-5-pc-62601.html
I picked up one of these a few ago to swap my wheel bearings, I wouldn't want use it as a daily shop tool but for the couple times a year it works well.
https://www.woessner-kolben.de/fileadmin/Downloads/Wossner_Piston_Installation_Instructions_and_ring_end_gap.pdf
I'd just use these recommendations.
It'd put you about .012 top and .015 2nd.
IMO I would go just a touch over in case you decided to throw some MR12 at it, advance the timing, etc...
https://store.schnitzracing.com/schnitz-racecut-transmission-suzuki-hayabusa-99-07/
I was going to suggest this but it says they are sold out. Might be worth a call. It seems expensive but by the time you pick up a used transmission replace a couple gears then get it under cut you are right...
I have a factory service manual for a 2001 and gave it a look. Found out if you want the specifications and diagnosis for the electrical system you have to buy a different manual. In my manual it shows a picture of the coil, the torque on the bolts and which plug wire goes to which cylinder...
Marquez has nothing left to prove. IMO he should walk away now, there is a big difference between having a bum arm/shoulder for the rest of your life (hopefully 50+ years) or having double vision. I know they have ruled out TBI for the time being but as many shots as he has taken to the head it...
You have choices some better than others
https://guhlmotors.com/
http://flash-tune.com/support/
https://www.openflashtablet.com/product-category/motorcycle/
http://ecueditor.com/
https://ftecu.com/shop/category/2008-2020-hayabusa/
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